Reference module indexing error

Omeka S Modules
1

Since updating the Reference module to the releases that are compatible with Omeka v4, I have not been able to index references via Global Settings > Jobs > Index reference metadata.

After running the job, I see the green “Settings successfully updated.” message. But if I open the job, I see the Status “Error”. And the reference_metadata table is empty. When looking at the log, I see this error:

2024-02-22T18:35:06+00:00 NOTICE (5): Starting creation of reference metadata. {"referenceId":"Reference/Metadata/job_2211"}
2024-02-22T18:35:09+00:00 ERR (3): Doctrine\ORM\EntityNotFoundException: Unable to find "DoctrineProxies\__CG__\Omeka\Entity\ItemSet" entity identifier associated with the UnitOfWork in /vendor/doctrine/orm/lib/Doctrine/ORM/EntityNotFoundException.php:43
Stack trace:
#0 /vendor/doctrine/orm/lib/Doctrine/ORM/UnitOfWork.php(3082): Doctrine\ORM\EntityNotFoundException::noIdentifierFound('DoctrineProxies...')
#1 /vendor/doctrine/orm/lib/Doctrine/ORM/Persisters/Entity/BasicEntityPersister.php(690): Doctrine\ORM\UnitOfWork->getEntityIdentifier(Object(DoctrineProxies\__CG__\Omeka\Entity\ItemSet))
#2 /vendor/doctrine/orm/lib/Doctrine/ORM/Persisters/Entity/BasicEntityPersister.php(727): Doctrine\ORM\Persisters\Entity\BasicEntityPersister->prepareUpdateData(Object(Reference\Entity\Metadata), true)
#3 /vendor/doctrine/orm/lib/Doctrine/ORM/Persisters/Entity/BasicEntityPersister.php(266): Doctrine\ORM\Persisters\Entity\BasicEntityPersister->prepareInsertData(Object(Reference\Entity\Metadata))
#4 /vendor/doctrine/orm/lib/Doctrine/ORM/UnitOfWork.php(1128): Doctrine\ORM\Persisters\Entity\BasicEntityPersister->executeInserts()
#5 /vendor/doctrine/orm/lib/Doctrine/ORM/UnitOfWork.php(425): Doctrine\ORM\UnitOfWork->executeInserts(Object(Doctrine\ORM\Mapping\ClassMetadata))
#6 /vendor/doctrine/orm/lib/Doctrine/ORM/EntityManager.php(392): Doctrine\ORM\UnitOfWork->commit(NULL)
#7 /modules/Reference/src/Job/UpdateReferenceMetadata.php(103): Doctrine\ORM\EntityManager->flush()
#8 /application/src/Job/DispatchStrategy/Synchronous.php(34): Reference\Job\UpdateReferenceMetadata->perform()
#9 /modules/Common/src/Job/Dispatcher.php(27): Omeka\Job\DispatchStrategy\Synchronous->send(Object(Omeka\Entity\Job))
#10 /application/data/scripts/perform-job.php(66): Common\Job\Dispatcher->send(Object(Omeka\Entity\Job), Object(Omeka\Job\DispatchStrategy\Synchronous))
#11 {main} {"referenceId":"Reference/Metadata/job_2211"}

I’ve tested with Omeka 3.2.3 and Omeka 4.0.4 and I’ve tested in two different server environments.

Reference 3.4.4 is the latest release that will index successfully. I would use this release, but the Reference block layout fails in 3.4.4 with this error when viewing the public page with a reference block:

Call to undefined method Doctrine\DBAL\Query\QueryBuilder::getQuery()

Are others experiencing this? Or is it just me?

2

Adding that this is happening in an installation of 3000 items, 2 sites with the uncustomized Default Omeka S theme, and all modules have been deactivated except for Reference.

3

Following up on this topic to ask if anyone can replicate this behavior or suggest how to get Reference 3.4.7 to successfully index references.

I’d like to update an Omeka S installation to 4 next week. But the site has 60,000+ items and relies heavily on the Reference module. So if indexing in 3.4.7 continues to fail, then I’ll have to wait to upgrade.

4

Did you updated doctrine in Omeka S and in each module: Run composer install --no-dev in the omeka directory.

5

I did not. I followed the instructions here for updating modules.

This behavior happens in a fresh install of Reference 3.4.7 as well (installed as described here)

6

It looks like @jflatnes suggested a fix in this github issue that @Daniel_KM merged recently. So maybe this will be resolved in the next release of Reference?

7

Yes, you can wait one week for the next release.

8

Hi @Daniel_KM, any update on this?